NOTE:

Note the dates of these publications. Most of them were published before 1996,

the time since which bioinformatics became a hot subject.

Capacities of computers and PCs during the early 1990s were not as high as now.

Thus the compression algorithms, distributed and massively parallel algorithms.

Database integration was attempted on GenBank and PIR in homolog compilation.

Unlike now, there were no specific journals dedicated to bioinformatics.

The journal,

Publications on PubMed

- Hwa A. Lim, "Turbo charging bioinformation for drug discovery", Silicon Valley High Tech, February 2000, Vol. 23, pp. 38-49.
- Hwa A. Lim, and Daxi Li, "Biological and Biological-related information as a business commodity and the rise of bioinformatics, Part I", Silicon Valley High Tech, November/December 1999, Vol. 20/21, pp. 40-47.
- Hwa A. Lim, and Daxi Li, "Biological and Biological-related information as a business commodity and the rise of bioinformatics, Part II", Silicon Valley High Tech, January 2000, Vol. 22, pp. 51-56.
- Hwa A. Lim, and T.V. Venkatesh, "Bioinformatics in pre- and post-genomics eras", Trends in Biotechnology, April 2000, Vol. 18, pp. 133-135.
- T.V. Venkatesh, Benjamin Bowen, and Hwa. A. Lim, "Bioinformatics, Pharma and Farmers", Trends in Biotechnology, March 1999, Volume 17 No. 3 (182), pp. 85-88.
- Hwa A. Lim and Tauseef R. Butt, "Bioinformatics Takes Charge", Trends in Biotechnology, March 1998, Vol. 16 No. 3 (170), pp. 104-107.
- Hwa A. Lim,
"
__Bioinformatics and Cheminformatics in the Drug Discovery Cycle__", In: Lecture Notes in Computer Science, Bioinformatics, R. Hofestaedt, T. Lengauer, M. Loffler and D. Schomburg (eds.), (Springer, Heidelberg, 1997), pp. 30--43.

- Victor B. Strelets and Hwa A. Lim, "Protein k-tuple Preference Analysis: Its Relation to Structure and Structural Prohibitions", International Journal of Mathematical Modelling and Scientific Computing, (1997).
- Victor B. Strelets, Igor B. Rogozin, Luciano Milanesi and Hwa A. Lim, "Exon/intron Structure Revealing Based on Protein k-tuple Statistics", International Journal of Mathematical Modelling and Scientific Computing, (1997).
- Hwa A. Lim and Victor B. Strelets, "Statistical Analysis of Known Proteins in Sequence Databases and Coding Region Prediction", In: Computational Medicine, Public Health, and Biotechnology (CompMed) Vol. 1, Matthew Witten (ed.), (World Scientific, New Jersey, 1996) 190--210.
- Victor B. Strelets and Hwa A. Lim,
"
__Compression of Protein Sequence Databases__", Computer Applications in Biosciences (CABIOS), 11(5), 557--561, (1995). - Victor B. Strelets and Hwa A. Lim,
"
__Ancient Splice Junction Shadows with Relation to Blocks in Protein Structure__", BioSystems, 36, 37--41, (1995). - V.B. Strelets, I.N. Shindyalov, Hwa A. Lim,
"
__Analysis of Peptides from Known Proteins: Clusterization in Sequence Space__", J. Mole. Evolution, 39(6), 625--630, (1994). - V.B. Strelets, A.A. Ptitsyn, L. Milanesi, Hwa A. Lim,
"
__Data Bank Homology Search Algorithm with Linear Computation Complexity__", Comput. Appl. Biosci. (CABIOS),10(3), 319--322, (1994). - I.N. Shindyalov, V.B. Streletc, N.A. Kolchanov, Hwa A. Lim,
"
__A Method for Multiple Alignment and Its Application in Homolog Compilation__", Protein Seq. Data Anal., 5(5), 219--225, (1993). - V.V. Solovyev, S.V. Korolev, Hwa A. Lim, "A New Approach for the Classification of Functional Regions of DNA Sequences Based on Fractal Representation", Intl J. Genomic Res., 1(1), 109--128, (1993).
- Hwa A. Lim, "Classification of Functional Regions of DNA Sequences using Fractal Representation", Mathl. Comput. Modelling, 2, 617--622, (1993).

- Hwa A. Lim, V.V. Solovyev,
"
__A New General Approach for Searching Functional Regions Using Fractal Representation of Nucleotide and Amino Acid Sequences__", Harnessing Biotechnology for the 21st Century, Ed. M.R. Ladisch and A. Bose, pp. 387--391 (American Chemical Society, Washington, D.C., 1992). - Hwa A. Lim, "Chaos Games Yield DNA Portraiture in Random Samples" (ed. Constance Holden), Science, 258, 894--895, (1992).
- E. Hamori, G. Varga, M.T. Carroll, Hwa A. Lim, "Protein Fragment with Functional Role Viewed as the Sum Total of All DNA Sequences Coding for the Same Function", FASEB J., 5(6), A1536, (1991).
- V.V. Solovyev, S.V. Korolev, V.G. Tumanyan, Hwa A. Lim, "A New Approach to the Classification of DNA Sites Based on the Fractal Representation of a Set of Functionally Similar Sequences", Doklady Biochemistry, (Communicated by Academician A.D. Mirzabekov), 319(6), 1496--1500, (1991).
- Hwa A. Lim, Ilya N. Shindyalov and Nikolay A. Kolchanov, "Computer Studies of Molecular Evolution of Gene Families Coding for Proteins", In: ISOZYMES: Organization and Roles in Evolution, Genetics and Physiology, Ed. C.L. Markert, J.G. Scandalios, H.A. Lim and O.L. Serov, (World Scientific Pub. Co., New Jersey, 1994), pp. 253--266.
- Hwa A. Lim and Ilya N. Shindyalov, "Homologous Gene Family Database Compilation", In: Proceedings of the Second International Conference on Bioinformatics, Supercomputing and Complex Genome Analysis. Ed. H.A. Lim, J.W. Fickett, C.R. Cantor and R.J. Robbins, (World Scientific Pub. Co., New Jersey, 1993), pp. 403--411.
- Ilya N. Shindyalov, Vcitor B. Streletc, Nikolay A. Kolchanov, Luciano Milanesi, P. Vezzoni, M. Repetto and Hwa A. Lim, "A Method for Joining Contigs in Automatics DNA Sequencing", In: Proceedings of the Second International Conference on Bioinformatics, Supercomputing and Complex Genome Analysis. Ed. H.A. Lim, J.W. Fickett, C.R. Cantor and R.J. Robbins, (World Scientific Pub. Co., New Jersey, 1993), pp. 413--418.
- Nikolay A. Kolchanov, Alexander E. Kel, M.P. Ponomarenko, A.G. Romachenko, J. Likhachev, Luciano Milanesi and Hwa A. Lim, "Patterns of Oligonucleotide Distribution within DNA and RNA Functional Sites", In: Proceedings of the Second International Conference on Bioinformatics, Supercomputing and Complex Genome Analysis. Ed. H.A. Lim, J.W. Fickett, C.R. Cantor and R.J. Robbins, (World Scientific Pub. Co., New Jersey, 1993), pp. 445--463.
- Alexander E. Kel, Nikolay A. Kolchanov, V.V. Kapitonov, M.P. Ponomarenko, E.A. Likhachev, Hwa A. Lim and Luciano Milanesi, "Computer Analysis and Recognition of Functional Sites via Oligonucleotide Pattern Distributions", In: Proceedings of the Second International Conference on Bioinformatics, Supercomputing and Complex Genome Analysis. Ed. H.A. Lim, J.W. Fickett, C.R. Cantor and R.J. Robbins, (World Scientific Pub. Co., New Jersey, 1993), pp. 521--543.
- Victor V. Solovyev, Hwa A. Lim, Luciano Milanesi and Charles Lawrence, "A Fractal Representation Approach for the Classification of Functional Regions of DNA Sequences", In: Proceedings of the Second International Conference on Bioinformatics, Supercomputing and Complex Genome Analysis. Ed. H.A. Lim, J.W. Fickett, C.R. Cantor and R.J. Robbins, (World Scientific Pub. Co., New Jersey, 1993), pp. 609--622.
- G. Varga, E. Hamori, M.T. Carroll, Hwa A. Lim, "Computer Graphics Algorithm for Abstract Representation of Protein and DNA Sequences Using PHIGS and Motif Program Development Tools", Proceedings of The 2nd International graPHIGS User's Group Conference and Workshop, 11, 1991.
- Hwa A. Lim, "Graphical Representation of DNA and Polyamino Acid Sequences", Proceedings of the International Conference on Modelling and Computer Methods in Molecular Biology and Genetics, (NOVA Science, New York, 1991).
- S.V. Korolev, V.V. Solovyev, V.G. Tumanyan, Hwa A. Lim, "Interactive Graphics Program of Chaos Game Representation of DNA Sequences", FSU-SCRI-91-02, 1990.

- S.L. DeKorte, Hwa A. Lim, "ADEPT: An Application Development Tool", International Journal of Mathematical Modelling and Scientific Computing, (1997).
- Victor B. Strelets and Hwa A. Lim, "SAGITTARIUS-- A Dialog Shell for Compressing Sequence Databases on IBM PC (PIR and GenBank Versions)", International Journal of Mathematical Modelling and Scientific Computing, (1997).
- Dimitriy K. Kuznetsov, and Hwa A. Lim,
"
__A Protein Visualization Program__", In: Visualizing Biological Information, C.A. Pickover (ed.), (World Scientific Publishing Co., New Jersey, 1995), pp. 61-71. - I.N. Shindyalov, V.B. Streletc, N.A. Kolchanov, Hwa A. Lim, "Homologous Sequence Analysis Toolbox Development: Multiple Alignment and Classification of Evolutionary Modes", Biomedical Modelling and Simulation, Ed. J. Eisenfeld, D.S. Levine and M. Witten, pp. 189--199 (Elsevier Science Publishers B.V., North Holland, 1992).
- M.T. Carroll, G. Varga, and Hwa A. Lim,
"
__Parallel And Serial Methods of Graphically Representing Polyamino Acid Sequences with H-Trees__", FSU-SCRI-91-157, October 1991. - D.K. Kuznetsov, Hwa A. Lim, "VisiCoor-A Simple Program for Protein Visualization", J. Molecular Graphics, 10, 21--28, (1991).

- G. Varga, J. Schmutz, B. Hauser, and Hwa A. Lim, "Neural Network Analysis of Sequencing By Hybridization (SBH) Signatures", In: LNCS Proceedings of German Conference on Bioinformatics, '96.
- E.J. Buks van Rensburg, Hwa A. Lim, "A Monte Carlo Study of Electrophoresis of Circular Polymer and DNA", Math. Modelling and Sci. Computing, (1997, to appear).
- Hwa A. Lim, "Electrophoresis of Topologically Nontrivial Macromolecules: Mathematical and Computational Studies", International Journal Modern Physics C, 7(2), (1996) 217--271.

- Hwa A. Lim, "Mathematical and Computational Studies of Kinesin Motility".
- Hwa A. Lim, E.J. van Rensburg, "A Numerical Simulation of Electrophoresis of Knotted DNA", Math. Modelling and Sci. Computing, 1(1), 153--163, (1993).
- V.V. Solovyev, S.K. Salikhova and Hwa A. Lim, "Spatial Structure Calculations of alpha-Helical Domains of Protein Molecules Using Quasispherical Primary Approximations", Biomedical Modelling and Simulation, Ed. J. Eisenfeld, D.S. Levine and M. Witten, pp. 201-211 (Elsevier Science Publishers B.V., North Holland, 1992).
- Hwa A. Lim, M.T. Carroll, and E.J. van Rensburg, "Electrophoresis of Knotted DNA in a Regular and a Random Electrophoretic Medium", Biomedical Modelling and Simulation, Ed. J. Eisenfeld, D.S. Levine and M. Witten, pp. 213--223 (Elsevier Science Publishers B.V., North Holland, 1992).
- Hwa A. Lim, "Mathematical Formulations and Computer Enumerations of Polymer Models with Loops", Intl. J. Mod. Phys., 3(2), 385--446, (1992).
- D.M. Pettus, N.P. Pettus and Hwa A. Lim, "A Computer Simulation of the Life Cycle of the Florida Bald Eagle", Mathl. Comput. Modeling, 16(10), pp. 183--196, (1992).
- Hwa A. Lim, E.J. van Rensburg, "Electrophoresis of Circular & Knotted Polymers/DNA", Mathematical Modelling and Scientific Computing, 2, 622--629, (1992).
- Hwa A. Lim, G.W. Slater, J. Noolandi, "A Model of the DNA Transient Orientation Overshoot during Gel Electrophoresis", J. Chem. Phys., 92, 709--721, (1990).
- D.E. Burnette, Hwa A. Lim, "Mathematical Models and Computer Enumerations of Polymers with Loops", Mathl. Comput. Modelling, 14, 486--493, (1990).
- Hwa A. Lim, J. Noolandi, G.W. Slater, "Generalized Tube Model of Biased Reptation for DNA-Gel Electrophoresis", Mathl. Comput. Modelling, 14, 494--499, (1990).

- Hwa A. Lim, D.E. Burnette, "Alternative Way to Locate the Transition Temperatures of Polymeric Models with Loops", Phys. Rev. A, 40, 5342--5350, (1989).
- J. Noolandi, G.W. Slater, Hwa A. Lim, J.L. Viovy,
"
__Generalized Tube Model of Biased Reptation for Gel Electrophoresis of DNA__", Science, 243, 1456--1458, (1989). - Hwa A. Lim, "Monte Carlo Simulations of the Physical Mechanisms for Separation of Topologically Nontrivial Macromolecules during Electrophoresis", In: Proceedings of the Second International Conference on Computational Physics, Biology Section, Ed. De-Yuan Li, Da-Hsuan Feng, Michael R. Strayer and Tian-Yuan Zhang, (International Press, Cambridge, MA, 1995), 216--227.
- Andrew Hasenfeld, Eric Pepke, Hwa A. Lim and Charles R. Cantor, "A New Agarose Model", In: Proceedings of the Second International Conference on Bioinformatics, Supercomputing and Complex Genome Analysis. Ed. H.A. Lim, J.W. Fickett, C.R. Cantor and R.J. Robbins, (World Scientific Pub. Co., New Jersey, 1993), pp. 501--504.
- Young Park, Hwa A. Lim, "Dynamic Electrophoretic Transport in Separation Process", FSU Technical Report FSU-SCRI-95-12 (1993).
- Young Park, Hwa A. Lim, "Electrophoretic Mass Transport of Polyelectrolyte in Composite Membranes: I. Macroscopic Study", FSU Technical Report FSU-SCRI-95-13 (1993).
- Young Park, Hwa A. Lim, "Electrophoretic Mass Transport of Polyelectrolyte in Composite Membranes: II. Molecular Study", FSU Technical Report FSU-SCRI-95-14 (1993).
- Gotz Schonherr, Hwa A. Lim, Gary W. Slater, Jaan Noolandi, "DNA Gel Electrophoresis: A Monte Carlo Simulation", FSU Technical Report (1991).
- A. Hasenfeld, C.R. Cantor, Hwa A. Lim, "Continuous Modulation of the Electric Field in PFG: A Numerical Study", FSU-SCRI-90-169, 1990.

- Hwa A. Lim,
"
__Scientific Communication: In search of one-handed scientists__",*Asia Pacific Biotech*, 17(10&11), 2013, pp. 29-35.

- Hwa A. Lim,
"
__Genes, Stem Cells and Regenerative Medicine__",*Asia Pacific Biotech*, 17(8), 2013, pp. 25-31. - Hwa A. Lim,
"
__Dance for Life__",*European Papers on the New Welfare*, No.17, 2011.

- Hwa A. Lim,
"
__Stem Cells and Regenerative Medicine__",*Asia Pacific Biotech*, 14(3), 2010, pp. 20-27.

- Hwa A. Lim,
"
__Creativity 2.0__",*Symbiosis*, September/December 2010.

- Hwa A. Lim,
"
__Bioinformatics in Communicable Diseases - The way forward__",*Asia Pacific Biotech*, 14(12), December 2010, pp. 12-21.

- Hwa A. Lim,
"
__Eco-fficiency - Green this and green that__",*Symbiosis*, May/August 2010.

- Hwa A. Lim,
"
__Eco-friendlily Yours: The way forward__",*Asia Pacific Biotech*, 14(7), July 2010, pp. 17-25.

- Hwa A. Lim,
"
__Einformatics - A green-collar career__",*Malaysia Energy Guide*, 2010/2011, July 2010, pp. 31-35.

- Hwa A. Lim,
"
__Renewable and alternative energies__",*Malaysia Energy Guide*, 2009/2010, pp. 30-33.

- Hwa A. Lim,
"
__Renewable and alternative energies__",*Symbiosis*, June 2008, pp. xx-yy.

- Hwa A. Lim,
"
__The business of innovation__",*Symbiosis*, March 2008, pp. 6-9.

- Hwa A. Lim,
"
__Technology adoption__",*Symbiosis*, March 2008, pp. 23-26.

- Hwa A. Lim,
"
__The Ninth Malaysia Plan: Looking in from outside__",*Symbiosis*, Oct 2006, pp. xx-yy.

- Hwa A. Lim,
"
__Biofuels - the fifth utility__",*Symbiosis*, October 2006, pp. 8-13.

- Hwa A. Lim,
"
__Incentives in promoting biotechnology__",*Symbiosis*, Nov 2005/Jan 2006, pp. 21-23.

- Hwa A. Lim,
"
__Agriculture - nature's gift__",*Symbiosis*, August 2005, pp. 10-12.

- Hwa A. Lim, "
__The Internet - Human-computer symbiosis__",*Symbiosis*, February-April 2005, pp. 22-25.

- Hwa A. Lim,
"
__Biotechnology - Past, present and future__",*Symbiosis*, October 2004, pp. 31-34.

- Hwa A. Lim,
"
__From human resource to human capital__",*Symbiosis*, May 2004, pp. 5-10.

- Hwa A. Lim,
"
__Creativity, culture, and entrepreneurship__",*Symbiosis*, February 2004, pp. 4-10.

- Hwa A. Lim,
"
__Bioinformatics, nanotechnology & SARS__",*Symbiosis*, October 2003, pp. 26-29.

- Hwa A. Lim,
"
__Change please, please change__",*Symbiosis*, October 2003, pp. 8-12.

- Hwa A. Lim,
"
__Education: A life-long process__",*Symbiosis*, December 2002, pp. 13-17.

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